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Tuesday, 14 November 2023

Exon 14

To paraphrase "GPs Behind Closed Doors", this post contains challenging medical issues.

Exon 14 sounds like a science fiction film. As little as ten years ago, it could well have been, but actually it is real.

I have something called the MET Exon 14 skipping mutation. It alters a specific gene, the MET gene (mesenchymal-epithelial transition) so that affected cells produce an abnormal protein which makes them grow uncontrollably.

The mutation causes lung tumours. It affects mainly smokers, but I put mine down to dirty Leeds in the nineteen-seventies when large numbers smoked, and offices, buses, cinemas, pubs and the shared houses I lived in reeked of a blue haze that stuck to your hair and clothes so much that you failed to notice. Leeds was also full of traffic fumes and pollution from coal fires and industries, and my accountancy job involved hours walking round warehouses, mills and factories where there were all kinds of dust and chemical vapours. The cause on my health record is "significant passive smoking". 

I was entirely symptomless until I had a seizure. Perhaps a routine chest X-ray might have detected it sooner and saved me a lot of trouble, but it was as good as impossible to get one during the covid lockdown, even if I had thought to request one.

Diagnosis begins with a CT-directed lung biopsy. You lie face-down in a CT scanner while a surgeon positions a thing metal tube into your back, through which they can then cut out and remove a small piece of tumour tissue for analysis and gene-sequencing. It is not a comfortable procedure. I wondered what was the cold liquid running into the back of my throat, which I had to spit out on to the scanner table. It was blood. We don't normally realise how cold the insides of our lungs get.

Gene sequencing is only the first part of the science fiction. There is a targeted therapy. The Merck drug company have licenced a chemical called Tepotinib (trade mane Tepmetko) in the form of a daily pill that blocks the abnormal protein, and slows down or stops the tumours from growing. It is a high cost treatment; I have heard a figure of £7,000 per month mentioned, but thanks to the NHS I do not have to pay.

Surprisingly, it is a relatively simple chemical - a hydrochloride hydrate of C29H28N6O2. I imagine that in some parts of the world they ignore the patent and make it themselves for a few pence per pill.

I have had other treatments too: chemotherapy which was awful, lung radiotherapy which was little trouble in my case, gamma knife radiotherapy which pinpoints and zaps small brain metastases, a brain op to drain the cyst that gamma knife left behind, which was scary. All over a year ago.

The side effects of Tepotinib are difficult, especially oedema (fluid retention). If you get cold it takes ages to get warm again because it is the equivalent of having 20 pounds (9 kg) of cold water bags strapped around your limbs and body, and, believe me, you would not want to have scrotal oedema (or vulval oedema I imagine, but don't know because I don't have that).

I am OK. It is but a scratch. I've had worse. None shall pass. I am still here.  

So, not only have we mapped the human genome to identify the 25,000 or so genes of our 23 chromosomes, we can gene-sequence malfunctioning cells to pick out a defective gene, understand its mechanisms, and construct a chemical to block its actions. To those of my generation, even the technologically literate, that really does sound like science fiction.

New things like this are coming along all the time. It should give hope to those who might become ill in the future.

42 comments:

  1. Your calm narrative covers a truly awful time you've had. It sounds as if you're doing better, I'm happy to say. I was advised to get out of Manchester in the early 60s, preferably out of England, for similar reasons. My life expectancy was maybe age 30. No space age treatments then if you went down. I got out, to the clean air of Wisconsin, and have done well.
    I think pollution has decreased in the UK since coal fires and most indoor smoking became history. For your sake I'm glad. I hope you continue to do well.

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    1. Thank you. Yes, there is much less pollution now, although traffic fumes in cities are a problem, and a lot of people are installing wood-burning stoves because of energy costs and to give a degree of independance. And there is plastic everywhere and the water companies dump sewage into rivers, so not all is good. I'm sure the Canadian wilds are much healthier.

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  2. What a yeoman battle you have fought! Thank goodness for modern medicine and the NHS, eh? I hope you continue to do well, Tasker.

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    1. Thank you. I am coping better than most, I am told, and should be OK so long as the Tepotinib keeps working

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  3. Spoken like a true accountant, dealing with the annual audit. Tic and tie, tic and tie. Well done.

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    1. Help! I thought I had escaped from accountancy 45 years ago. I didn't realise it still showed.

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  4. You are right, the treatment and diagnosis sound science fiction-y. You are so calm in telling this story, I admire you.

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    1. Thank you. It is as it is. And yes, like science fiction.

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  5. It sounds very much like science fiction, but here you are, and that's a fact!

    I like your Monty Python reference. I shall bring you a shrubbery with all due haste.

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    1. Well spotted. But, of course, you have to know these things when you are a king.

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  6. I am sure we are all very pleased your treatment was successful, and thank you for sharing your story. I can imagine someone suffering from the same condition might come across this short tale and find it very helpful.

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    1. Thank you. I was concerned about having said too much, but if it is helpful to someone then it is worth it. It is surprising what we can learn to live with.

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  7. I didn't know the blood from our lungs is cold. The procedures you went through ranged from the uncomfortable to the scary and awful, but as you say, you are still here. Your family must be so grateful for that, too.
    When it comes to medical progress, I am endlessly fascinated. My eye operations are a good example. They were scary to me, which is why I opted for full anaesthetics every time (even though it was normal procedure only for the first, "big" operation), but I was truly interested in the explanations given, and in what I experienced before and after each one. To me, it is close to a miracle what can be done now to help people like me with poor eyesight, and I don't begrudge the 5,000 euros I had to fork out because my version of the NHS only paid for the big OP.

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    1. It may have been colder than normal because the scanner is well ventilated, but it did surprise me. Eyes are another area where treatments are beyond belief. Just a few decades ago people would have lost much of their vision.

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  8. You are very brave and practical in how you describe your illness, the mind always working and analysing each and every step. I hope you have come to the end of it all, though I am sure there will always be procedures over time.
    Being born in Wolverhampton (the Black Country) I well remember the yellow smogs of my childhood as I walked to get a trolley bus home, the hiss and clicks as the bus started up and I suffered from asthma.

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    1. I think that whatever we suffer there is really no option but to get on with things. I do have days when things seem so depressing that lying down and doing nothing seems attractive, especially the last three with a dreadful cold, but that is the start of a slippery slope. My wife has been a rock.

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  9. It sounds a truly horrible experience, one not to be repeated. I hope your health is much improved and the oedema can be managed.

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    1. Oedema can be quite limiting, and it goes up and down, but hopefully we'll get the better of it. The treatment works by messing with your proteins, but is also affect other proteins too, which causes the oedema. All a complex physiological ballancing act.

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  10. First of all, I'm sorry you're having to go through all this. My dad had lung cancer so I have some experience with the treatments -- though he was a heavy smoker and he may have had a different type. I'm surprised you weren't anesthetized for the biopsy. Doctors these days never seem to want to knock us out, but personally, for a lot of tests and treatments, I'd prefer it!

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    1. Oh, I forgot to get to my second point, which was: Yes, modern medicine does seem quite miraculous in the detailed and targeted ways they can tackle certain maladies. Gene therapy is mind-blowing stuff.

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    2. I believe there are different types of lung tumours, and the Tepotinib treatment is for Exon 14 specifically. I don't know whether there are gene therapies or immunotherapies too, which I think are different. They are all miraculous if they work. We go on our way with something or other in the end. It's luck of the draw what it is.

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  11. The human respiratory system has long enthralled me.
    You write with such exactitude ; as clearly as a New Yorker report.
    Like Meike, I did not know that the blood from the lungs is cold.
    Now, I wish to read further on Tepotinib.
    We grew up in the same time, Tasker.
    Offices, buses, trains, pubs, cafes, cinemas and homes were
    polluted by cigarette smoke.

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    1. All the big towns were the same, as was my small town.
      There are some things about the respiratory system that are beyond belief. According to someone I worked with once, who was working on software to represent proteins in 3D, then if the sizes of cardon dioxide and oxygen molecules were different, and if the blood flowed through the lungs at any other speed, then respiratory gases would not exchange properly in the lungs and we would not exist.

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    2. Philip Drew allowed me to smoke Gauloises (blue packet)
      in his literature tutorials. He was not himself a smoker.
      Today I won't allow anyone to smoke in my home.

      Philip was a brilliant man.
      Read his obituary in The Herald online 2018 :
      *Philip Drew, Professor of English Glasgow University.*
      He converted me to Milton's Paradise Lost, and wrote on
      Robert Browning.
      Gauloises are no longer sold in Britain.

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    3. Gauloises! What a poseur! Did you catch your Jane Birkin?

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    4. *1970 : Jane Birkin interview/ 24 Hours/ Classic Interview/
      BBC Archives.* YouTube.

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  12. Such a sobering read, Tasker. Not an experience to be wished on anyone.

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    1. It is surprising what we learn to cope with. Everyone will have their own battle in the end. Very sobering.

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  13. Thank you for explaining all of this Tasker. I knew you were battling with a health issue but I did not wish to pry. In spite of everything - if this blog is anything to go by - you seem to be keeping your pecker up. I hope you're still here at this time next year and on into the 2030's entertaining and educating your adoring public while meting out drily humorous comments like Phil "The Power" Taylor throwing darts.

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    1. Eh it's a bugger i'n't. The 2030s would be pushing it. My diary pages don't go that far anyway.

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  14. Tasker does NHS have a screening program for that (for other family members) like exists for carriers of BRCA genes? Mr B's family has recently been alerted to being carriers and testing was offered to each generation in turn. Any evidence among your forebears now that you know and can look back? I hope you find ways to get the odema balanced out - there are some kinds of very gentle massage that can help. We were taught how to do them on my father when treatments gave him awful odema.

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    1. About a third of my mother's side of the family died of cancer of one sort or another, many of either breast or bowel cancer. I gave an extensive family tree with all these details to the genetics people, but they said there was nothing sufficiently defined to identify anything at this time.

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  15. It truly does sound like science fiction. You've had so much to deal with. Thank you for sharing this post with us. x

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    1. It has been a bit challenging, and not just for me.
      There was a report on our news today about a treatment for sickle cell disease in which they actually cut out part of a gene and return it into the sufferer's bone marrow giving in some cases a complete cure. Only problem is that it costs over £1M per patient.

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  16. Getting old is not for the feint hearted. Sorry you have that complaint though.

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    1. Thank you. We all get to climb our own personal Everest.

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  17. Dear Tasker, thank you for your lucid and unemotional description of what has obviously been one hell of a time for you and your family. I am full of admiration for your attitude and feel sure that it can only help you in dealing with your illness. It is fascinating to read about the developments in treatment and your post gives me hope for the future. All praise the NHS.
    I remember the smogs of the '50's and early '60's in Leeds; I once had to walk beside my father's car kicking the kerb with my foot while he drove, slowly, because we couldn't see anything!

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    1. Thank you. We get what we get and there's not much we can do about it.
      In Leeds at its worst, the police had to stand in the Headrow with flaming torches to direct traffic. I only saw this once, probably in 1968. It really was a dirty old town. The traffic fumes in the rush hour are still pretty awful.

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  18. I misread the tittle of this post as Exxon.

    An interesting, and sobering read.

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    1. I feared saying too much but perhaps it may be of help or reassurance to someone. Prior to Tepotinib the 5-year survival rate was not good, but hopefully it will improve.

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  19. I'm devastated to read what an awful time you've gone through.
    Your clear and concise review is illuminating and will be of help to many.
    Carol

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    1. Thank you. I hope so. The main thing is that I am still here.

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I welcome comments and hope to respond within a day or two, but my condition is making this increasingly difficult. Some days I might not look here at all. Also please note that comments on posts over 7 days old will not appear until they have been moderated.